Resonance Assignment
General Reading : 04CR3541

NMR programs for Automated Protein Assignment.

  • AURELIA ( 95JB255 ).
  • ATNOS: AuTomated NOESY peak picking ( 02JB171)
  • KNOWNOE ( 02JB271): Automated assignment of NOESY spectra.
  • TATAPRO ( 00JB125 ).
  • MAPPER ( 00JB129-18 ): Sequence-specific NMR assignment of proteins by global fragment mapping
  • ANSIG ( 00JB329-18 ).
  • PRONTO ( 94METH288 )
  • XEASY ( 97JCC139 )
  • NMRView ( 94JB603 )
  • Automated assignment of ambiguous NOEs with ARIA ( 01METH71-339 )
  • AutoAssign ( 01METH91-339 )
  • NOAH/DIAMOD: Automated assignment and 3D structure calculations using 2D homonuclear/3D heteronuclear NOESY ( 02JB249-22)
  • MONTE: A Montecarlo based approach ( 03JB1-25 and 03JB11-25).
  • PICS: Program for calibrating and filtering of peak lists ( 03JB69-27), by combining AUTOPSY (automated peak picking - 98JMR288-135) and GARANT (resonance assignment - 96JB207-7).
  • Smartnotebook: A semi-automated approach to sequential assignments ( 03JB313-27).
  • Nuclear Vector Replacement (NVR) by Expectation/Maximization (EM): Automated Assignment procedure fora protein of known structure ( 04JB111-29)
  • MARS: Automatic backbone assignment of proteins ( 04JB11-30 and 04JB25-30)
    • Amino acid type prediction:
  • PLATON ( 03JB41-25).
  • PROTYP ( 93JB185).
    • Evaluation and presentation of assignment data using AVS: Assignment Validation Sotfware ( 04JB341-28)

    Others:

  • RFAC ( 00JB137 ): Automated NMR R-factor estimation
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